PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009865001
Common NameVIT_18s0001g13930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARF
Protein Properties Length: 908aa    MW: 100064 Da    PI: 4.988
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009865001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.7e-22148249199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++  ++++++iyr++++r++lt+GW+ Fv+a++L++gD v+F   +
  GSVIVT01009865001 148 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELIVRDLHDITYTFRHIYRGQPKRHLLTTGWSVFVSAKRLRAGDAVLFI--R 236
                        99*********************999*****9555554.49************************************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                        +++ +l+++v+r+
  GSVIVT01009865001 237 DEKSQLLLGVRRA 249
                        5677789999997 PP

2Auxin_resp104.99.4e-35274362183
         Auxin_resp   1 aahaastksvFevvYnPr.....astseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+++YnPr     a++seFv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp++Wp+SkWr+L+
  GSVIVT01009865001 274 AAHAAANRSPFTIFYNPRhafflACPSEFVIPLAKYRKSVYgTQISVGMRFGMMFETEESGKRRYMGTIVGISDLDPLSWPGSKWRNLQ 362
                        79****************55555579***************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-46135277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-40141262IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-21147248No hitNo description
PfamPF023626.3E-20148249IPR003340B3 DNA binding domain
PROSITE profilePS5086311.603148250IPR003340B3 DNA binding domain
SMARTSM010192.7E-23148250IPR003340B3 DNA binding domain
PfamPF065079.4E-30274362IPR010525Auxin response factor
PfamPF023092.6E-10796884IPR033389AUX/IAA domain
PROSITE profilePS5174524.937797881IPR000270PB1 domain
SuperFamilySSF542771.9E-8813876No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MMSSVEENIK AGGLVSGTQT TLIEEMKLLK EMQDQSGPRK AINSELWHAC AGPLVSLPQV  60
GSLVYYFPQG HSEQVAVSTK RTATSQIPNY PNLPSQLMCQ VHNVTLHADK DTDEIYAQMS  120
LQPVNSEKDI FPIPDFGLKP SKHPSEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS  180
MQPPTQELIV RDLHDITYTF RHIYRGQPKR HLLTTGWSVF VSAKRLRAGD AVLFIRDEKS  240
QLLLGVRRAN RQQTSLPSSV LSADSMHIGV LAAAAHAAAN RSPFTIFYNP RHAFFLACPS  300
EFVIPLAKYR KSVYGTQISV GMRFGMMFET EESGKRRYMG TIVGISDLDP LSWPGSKWRN  360
LQVEWDESGC GDKQSRVSSW EIETPESLFI FPSLTSSLKR PMHAGFLGGE AEWGSLMKRP  420
FIRVLENGNG VLPYPTIPNI CSEQLMKMLL KPQLVNPPGT LTPAFQDSGV KAASLQEARI  480
IEGMIKQQPP PIPSENKLLQ NQNHPQPCLD QPDATNSDLP SQPNLVGQVQ PLNKLENQTP  540
SGNAEKSNIE PVHTADQLSQ LTSTGQGDEE KLAKSPKNPQ NLTNSFMQPH LESSIFHAQQ  600
ISAPPFDSNP NALSPYIDTD EWILYPSANQ SFGGVLRSPG PLSTFSLQDP SVVFPEAINP  660
TLPSMGQEIW DHQLNNAKYL SDDSNNQSGI YSCLNFDVSN GGSTVVDPSV SSTILDEFCT  720
FKDADFPDPS DCLVGNFSTS QDVQSQITSV SLADSQAFSR PDFLDNSGGT SSSNVDFDES  780
SLLQNSSWQQ VAPPPMRTYT KVQKMGSVGR SIDVASFKNY EELCSAIECM FGLEGLLNDQ  840
KGSGWKLVYV DYENDVLLVG DDPWKEFVGC VRCIRILSPS EVQQMSEEGM QLLNSTAIEG  900
INDSIRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.023875392Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.13210.0fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4447970.0AM444797.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X074140.10, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003634382.20.0PREDICTED: auxin response factor 5
RefseqXP_010664787.10.0PREDICTED: auxin response factor 5
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLF6H0710.0F6H071_VITVI; Auxin response factor
STRINGVIT_18s0001g13930.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP82601216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein